{"id":10,"date":"2015-04-08T11:14:27","date_gmt":"2015-04-08T09:14:27","guid":{"rendered":"http:\/\/people.unipi.it\/lorenzo_cupellini\/?page_id=10"},"modified":"2026-02-12T18:51:15","modified_gmt":"2026-02-12T17:51:15","slug":"research","status":"publish","type":"page","link":"https:\/\/people.unipi.it\/lorenzo_cupellini\/research\/","title":{"rendered":"Research"},"content":{"rendered":"\n<h2 class=\"wp-block-heading\" id=\"multichromophoric\">Multichromophoric systems and excitons<\/h2>\n\n\n\n<p>Supramolecular and molecular systems composed of many chromophores are ubiquitous in biochemistry and material science. Delocalized excitations (<strong>excitons<\/strong>) shape the optical and chiroptical properties of these &#8220;multichromophoric&#8221; systems. Furthermore, new photophysical pathways arise, such as <strong>excitation energy transfer<\/strong> (EET), <strong>charge transfer<\/strong>, dynamic localization, etc.<\/p>\n\n\n\n<div class=\"wp-block-columns is-layout-flex wp-container-core-columns-is-layout-9d6595d7 wp-block-columns-is-layout-flex\">\n<div class=\"wp-block-column is-layout-flow wp-block-column-is-layout-flow\" style=\"flex-basis:100%\"><div class=\"wp-block-image\">\n<figure class=\"alignright size-full is-resized\"><a href=\"https:\/\/people.unipi.it\/lorenzo_cupellini\/wp-content\/uploads\/sites\/703\/2025\/12\/image-10.png\"><img loading=\"lazy\" decoding=\"async\" width=\"661\" height=\"312\" src=\"https:\/\/people.unipi.it\/lorenzo_cupellini\/wp-content\/uploads\/sites\/703\/2025\/12\/image-10.png\" alt=\"\" class=\"wp-image-183\" style=\"width:417px;height:auto\" srcset=\"https:\/\/people.unipi.it\/lorenzo_cupellini\/wp-content\/uploads\/sites\/703\/2025\/12\/image-10.png 661w, https:\/\/people.unipi.it\/lorenzo_cupellini\/wp-content\/uploads\/sites\/703\/2025\/12\/image-10-300x142.png 300w\" sizes=\"auto, (max-width: 661px) 100vw, 661px\" \/><\/a><\/figure>\n<\/div>\n\n\n<p><strong>We develop new methods to describe the spectroscopy and photophysics of multichromophoric systems from first principles<\/strong>. We combine multiscale quantum chemistry, vibronic coupling models, and quantum dynamics in open-system and closed-system formulation to give a complete description of the dynamic properties of such systems.<\/p>\n\n\n\n<p>We collaborate with the groups of <a href=\"https:\/\/www.ub.edu\/cplab\/\">Carles Curutchet<\/a> (Universitat de Barcelona, Spain), <a href=\"https:\/\/www.jku.at\/en\/institute-for-theoretical-physics\/about-us\/team\/thomas-renger\/\">Thomas Renger<\/a> (JKU Universitat Linz, Austria), and <a href=\"http:\/\/www.iccom.cnr.it\/en\/thc2-lab-2\/\">Fabrizio Santoro<\/a> (CNR, Pisa, Italy)<\/p>\n<\/div>\n<\/div>\n\n\n\n<h5 class=\"wp-block-heading\">Selected publications<\/h5>\n\n\n\n<p><a href=\"https:\/\/pubs.acs.org\/doi\/10.1021\/acs.chemrev.9b00135\" target=\"_blank\" rel=\"noreferrer noopener\">Quantum Chemical Modeling of the Photoinduced Activity of Multichromophoric Biosystems.<\/a><br>Segatta, F., Cupellini, L., Garavelli, M., Mennucci, B.<br><em>Chem. Rev.<\/em> <strong>2019<\/strong>, 119 , 9361-9380 DOI: 10.1021\/acs.chemrev.9b00135<\/p>\n\n\n\n<p><a href=\"https:\/\/doi.org\/10.1021\/acs.jpclett.5c02463\">Quantum Dynamics Simulations Reveal Ultrafast and Coherent Charge Transfer in the Lhca4 Antenna of Photosystem I<\/a><br>Saraceno, P., Santoro, F.,  Cupellini, L.<br><em>J. Phys. Chem. Lett.<\/em> <strong>2025<\/strong>, DOI: <a href=\"https:\/\/doi.org\/10.1021\/acs.jpclett.5c02463\">10.1021\/acs.jpclett.5c02463<\/a><\/p>\n\n\n\n<h2 class=\"wp-block-heading\" id=\"light-harvesting\">Light harvesting and photoprotection in photosynthesis<\/h2>\n\n\n\n<div class=\"wp-block-group\"><div class=\"wp-block-group__inner-container is-layout-constrained wp-block-group-is-layout-constrained\">\n<div class=\"wp-block-columns is-layout-flex wp-container-core-columns-is-layout-9d6595d7 wp-block-columns-is-layout-flex\">\n<div class=\"wp-block-column is-layout-flow wp-block-column-is-layout-flow\"><div class=\"wp-block-image\">\n<figure class=\"alignright size-full is-resized\"><a href=\"https:\/\/people.unipi.it\/lorenzo_cupellini\/wp-content\/uploads\/sites\/703\/2025\/12\/image-6.png\"><img loading=\"lazy\" decoding=\"async\" width=\"501\" height=\"582\" src=\"https:\/\/people.unipi.it\/lorenzo_cupellini\/wp-content\/uploads\/sites\/703\/2025\/12\/image-6.png\" alt=\"\" class=\"wp-image-148\" style=\"width:288px;height:auto\" srcset=\"https:\/\/people.unipi.it\/lorenzo_cupellini\/wp-content\/uploads\/sites\/703\/2025\/12\/image-6.png 501w, https:\/\/people.unipi.it\/lorenzo_cupellini\/wp-content\/uploads\/sites\/703\/2025\/12\/image-6-258x300.png 258w\" sizes=\"auto, (max-width: 501px) 100vw, 501px\" \/><\/a><\/figure>\n<\/div>\n\n\n<p>Light harvesting is a crucial step of photosynthesis, whereby photosynthetic pigments contained in <strong>antenna complexes<\/strong> absorb sunlight and transport the excitation energy towards the reaction centers, where chage separation occurs. When too much light is absorbed, photosynthetic organisms activate <strong>photoprotection<\/strong> strategies, such as <strong>nonphotochemical quenching<\/strong>, which help regulate energy transport and dissipate excess energy. The energy flow within and between complexes depends on the properties of the <strong>multichromophoric<\/strong> aggregate: pigment-pigment excitonic interactions, pigment-protein interactions, and vibronic coupling. Ultrafast nonlinear spectroscopy can probe the <strong>exciton dynamics<\/strong> in the femtosecond to picosecond time scales, but first-principles models can achieve an atomistic understanding of such processes.<\/p>\n<\/div>\n<\/div>\n<\/div><\/div>\n\n\n<div class=\"wp-block-image\">\n<figure class=\"alignleft size-large is-resized\"><a href=\"https:\/\/people.unipi.it\/lorenzo_cupellini\/wp-content\/uploads\/sites\/703\/2025\/12\/Lorenzo-1.png\"><img loading=\"lazy\" decoding=\"async\" width=\"1024\" height=\"490\" src=\"https:\/\/people.unipi.it\/lorenzo_cupellini\/wp-content\/uploads\/sites\/703\/2025\/12\/Lorenzo-1-1024x490.png\" alt=\"\" class=\"wp-image-154\" style=\"width:449px;height:auto\" srcset=\"https:\/\/people.unipi.it\/lorenzo_cupellini\/wp-content\/uploads\/sites\/703\/2025\/12\/Lorenzo-1-1024x490.png 1024w, https:\/\/people.unipi.it\/lorenzo_cupellini\/wp-content\/uploads\/sites\/703\/2025\/12\/Lorenzo-1-300x143.png 300w, https:\/\/people.unipi.it\/lorenzo_cupellini\/wp-content\/uploads\/sites\/703\/2025\/12\/Lorenzo-1-768x367.png 768w, https:\/\/people.unipi.it\/lorenzo_cupellini\/wp-content\/uploads\/sites\/703\/2025\/12\/Lorenzo-1-1536x734.png 1536w, https:\/\/people.unipi.it\/lorenzo_cupellini\/wp-content\/uploads\/sites\/703\/2025\/12\/Lorenzo-1.png 1673w\" sizes=\"auto, (max-width: 1024px) 100vw, 1024px\" \/><\/a><\/figure>\n<\/div>\n\n\n<p>We employ molecular modelling and <strong>molecular dynamics<\/strong> techniques, <strong>multiscale quantum chemistry<\/strong>, spectroscopy simulations, and <strong>open quantum systems<\/strong> dynamics methods to unravel key properties of antenna complexes and photosystems. We devise computational strategies to understand how the structure shapes the properties and dynamics of photosynthetic pigment aggregates, from small light-harvesting complexes to entire photosystems.<\/p>\n\n\n\n<h5 class=\"wp-block-heading\">Main collaborations<\/h5>\n\n\n\n<ul class=\"wp-block-list\">\n<li>Giulio Cerullo (Politecnico di Milano)<\/li>\n\n\n\n<li>Roberta Croce (Vrije Universitet Amsterdam)<\/li>\n\n\n\n<li>Nicoletta Liguori (ICFO, Barcelona)<\/li>\n\n\n\n<li>Tjaart P. J. Kr\u00fcger (University of Pretoria)<\/li>\n\n\n\n<li>Toma\u0301s\u030c Poli\u0301vka and David B\u00edna (University of South Bohemia)<\/li>\n<\/ul>\n\n\n\n<h5 class=\"wp-block-heading\">Selected publications<\/h5>\n\n\n\n<p><a href=\"https:\/\/doi.org\/10.1021\/acs.jpclett.4c02005\">Energetic Landscape and Terminal Emitters of Phycobilisome Cores from Quantum Chemical Modeling<\/a><br>Cupellini, L., Gwizdala, M., Tjaart P. J. Kr\u00fcger, T. P. J.<br><em>J. Phys. Chem. Lett<\/em>. <strong>2024<\/strong>, <em>15<\/em>, 38, 9746\u20139756<\/p>\n\n\n\n<p><a href=\"https:\/\/doi.org\/10.1063\/5.0086275\">The atomistic modeling of light-harvesting complexes from the physical models to the computational protocol<\/a><br>Cignoni, E., Slama, V., Cupellini, L., Mennucci, B.<br><em>J. Chem. Phys.<\/em> <strong>156,<\/strong> 120901 (2022)<\/p>\n\n\n\n<h2 class=\"wp-block-heading\">Multiscale methods and machine learning<\/h2>\n\n\n<div class=\"wp-block-image\">\n<figure class=\"alignright size-full is-resized\"><a href=\"https:\/\/people.unipi.it\/lorenzo_cupellini\/wp-content\/uploads\/sites\/703\/2026\/02\/image-2.png\"><img loading=\"lazy\" decoding=\"async\" width=\"269\" height=\"238\" src=\"https:\/\/people.unipi.it\/lorenzo_cupellini\/wp-content\/uploads\/sites\/703\/2026\/02\/image-2.png\" alt=\"\" class=\"wp-image-228\" style=\"width:232px;height:auto\" \/><\/a><\/figure>\n<\/div>\n\n\n<p>Multiscale methods are key to describe chemical and photochemical processes in condensed phase, whether in solution or in more complex biological matrices. We develop and apply polarizable embedding methods to describe ground and excited states of systems in complex environments and their dynamics. The <strong>QM\/MMPol method<\/strong>, a QM\/MM scheme based on induced point dipoles, gives an exquisite description of environment effects on excited states. We further develop methods to include<strong> density-dependent nonelectrostatic interactions<\/strong> (e.g. dispersion) in QM\/MM.<\/p>\n\n\n<div class=\"wp-block-image\">\n<figure class=\"alignleft size-full is-resized\"><a href=\"https:\/\/people.unipi.it\/lorenzo_cupellini\/wp-content\/uploads\/sites\/703\/2026\/02\/image-3.png\"><img loading=\"lazy\" decoding=\"async\" width=\"233\" height=\"143\" src=\"https:\/\/people.unipi.it\/lorenzo_cupellini\/wp-content\/uploads\/sites\/703\/2026\/02\/image-3.png\" alt=\"\" class=\"wp-image-229\" style=\"width:202px;height:auto\" \/><\/a><\/figure>\n<\/div>\n\n\n<p>The computational bottleneck of QM methods can be overcome by <strong>machine learning<\/strong> (ML) potentials. With ML potentials it is possible to simulate QM-level molecular dynamics with strongly reduced computational effort. However, ML methods alone cannot be coupled with MM in the same way as QM methods. We develop physics-based <strong>electrostatic embedding ML\/MM <\/strong>models designed to reproduce the physics of QM\/MM schemes. These models can predict how ground-state and excited-dynamics change with changing environment. <\/p>\n\n\n<div class=\"wp-block-image\">\n<figure class=\"alignright size-full is-resized\"><a href=\"https:\/\/people.unipi.it\/lorenzo_cupellini\/wp-content\/uploads\/sites\/703\/2026\/02\/image-1.png\"><img loading=\"lazy\" decoding=\"async\" width=\"500\" height=\"279\" src=\"https:\/\/people.unipi.it\/lorenzo_cupellini\/wp-content\/uploads\/sites\/703\/2026\/02\/image-1.png\" alt=\"\" class=\"wp-image-223\" style=\"width:267px;height:auto\" srcset=\"https:\/\/people.unipi.it\/lorenzo_cupellini\/wp-content\/uploads\/sites\/703\/2026\/02\/image-1.png 500w, https:\/\/people.unipi.it\/lorenzo_cupellini\/wp-content\/uploads\/sites\/703\/2026\/02\/image-1-300x167.png 300w\" sizes=\"auto, (max-width: 500px) 100vw, 500px\" \/><\/a><\/figure>\n<\/div>\n\n\n<p>We also develop ML\/MM models that target excitation energies in solvent and protein environments, and disentangle the multiple effects of a polarizable environment on the solvatochromic shifts.<\/p>\n\n\n\n<h5 class=\"wp-block-heading\">Main collaborations<\/h5>\n\n\n\n<ul class=\"wp-block-list\">\n<li><a href=\"http:\/\/molecolab.dcci.unipi.it\/\">Benedetta Mennucci <\/a>(UNIPI)<\/li>\n\n\n\n<li><a href=\"https:\/\/people.unipi.it\/filippo_lipparini\/\">Filippo Lipparini<\/a> (UNIPI)<\/li>\n<\/ul>\n\n\n\n<p><\/p>\n","protected":false},"excerpt":{"rendered":"<p>Multichromophoric systems and excitons Supramolecular and molecular systems composed of many chromophores are ubiquitous in biochemistry and material science. Delocalized&hellip;<\/p>\n<p><a class=\"btn btn-dark btn-sm unipi-read-more-link\" href=\"https:\/\/people.unipi.it\/lorenzo_cupellini\/research\/\">Leggi tutto&#8230;<\/a><\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_acf_changed":false,"footnotes":""},"class_list":["post-10","page","type-page","status-publish","hentry"],"acf":[],"featured_image_src":null,"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v27.6 - https:\/\/yoast.com\/product\/yoast-seo-wordpress\/ -->\n<title>Research - Lorenzo Cupellini<\/title>\n<meta name=\"description\" content=\"Multichromophoric systems and excitons, Light Harvesting and Photoprotection, Machine Learning\" \/>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/people.unipi.it\/lorenzo_cupellini\/research\/\" \/>\n<meta property=\"og:locale\" content=\"it_IT\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"Research - 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