{"id":120,"date":"2023-02-22T22:47:10","date_gmt":"2023-02-22T21:47:10","guid":{"rendered":"https:\/\/people.unipi.it\/antonio_profico\/?page_id=120"},"modified":"2023-05-09T21:48:47","modified_gmt":"2023-05-09T19:48:47","slug":"arothron-r-package","status":"publish","type":"page","link":"https:\/\/people.unipi.it\/antonio_profico\/arothron-r-package\/","title":{"rendered":"Arothron – R package"},"content":{"rendered":"\n
\n
\"\"<\/a><\/figure>\n<\/div><\/div>\n\n\n\nInstall Arothron<\/title>\n\n\n\n\n<p>The Arothron R package is designed to analyse digital models of fossil specimens. By using Arothron, it is possible to investigate the inner morphology of 3D skeletal models, gain a full representation of the original shapes of damaged specimens, and compare shapes across specimens. <\/p>\n\n<p>To install Arothron from CRAN<\/p>\n<p style=\"padding: 10px;background-color: #F5F5F5\">install.packages(“Arothron”)<br>\nlibrary(Arothron)<\/p>\n\n<p>Creating and endocast is a challenging task in Virtual Anthropology. This process is time comsuming and prone to error. The function endomaker is basically an automatic tool for digital endocast production. It works by providing a CT-scan derived cranial mesh as the only input<\/p>\n\n<p>Let’s use a cranial 3D mesh embedded in Arothron<\/p>\n\n<p style=\"padding: 10px;background-color: #F5F5F5\">\nlibrary(rgl)<br>\ndata(human_skull)<br>\nshade3d(human_skull,col=”gray”)<\/p>\n\n\n\n<figure class=\"wp-block-image size-full\"><a href=\"https:\/\/people.unipi.it\/antonio_profico\/wp-content\/uploads\/sites\/625\/2023\/02\/movie-3.gif\"><img loading=\"lazy\" decoding=\"async\" width=\"256\" height=\"256\" src=\"https:\/\/people.unipi.it\/antonio_profico\/wp-content\/uploads\/sites\/625\/2023\/02\/movie-3.gif\" alt=\"\" class=\"wp-image-143\" \/><\/a><\/figure>\n\n\n\n<title>Install Arothron<\/title>\n<p>Run the function endomaker<\/p>\n<p style=\"padding: 10px;background-color: #F5F5F5\">\nsapendo<-endomaker(human_skull, param1_endo = 1.0, decmesh = 20000, num.cores=NULL)<\/p>\n<p>Plot the 3D model of the modern human endocast<\/p>\n<p style=\"padding: 10px;background-color: #F5F5F5\">\nwire3d(sapendo$endocast,col=”violet”)<\/p><p><\/p>\n\n\n\n<figure class=\"wp-block-image size-full\"><a href=\"https:\/\/people.unipi.it\/antonio_profico\/wp-content\/uploads\/sites\/625\/2023\/02\/movie_e.gif\"><img loading=\"lazy\" decoding=\"async\" width=\"256\" height=\"256\" src=\"https:\/\/people.unipi.it\/antonio_profico\/wp-content\/uploads\/sites\/625\/2023\/02\/movie_e.gif\" alt=\"\" class=\"wp-image-144\" \/><\/a><\/figure>\n\n\n\n<title>Install Arothron<\/title>\n\n\n\n\n<p>In addition, endomaker calculates the volume of cranial endocast<\/p>\n<p style=\"padding: 10px;background-color: #F5F5F5\">\necv<-sapendo$volume <br>\necv <br>\n1356.875<br>\n<\/p>\n","protected":false},"excerpt":{"rendered":"<p>Install Arothron The Arothron R package is designed to analyse digital models of fossil specimens. By using Arothron, it is…<\/p>\n<p><a class=\"btn btn-dark btn-sm unipi-read-more-link\" href=\"https:\/\/people.unipi.it\/antonio_profico\/arothron-r-package\/\">Leggi tutto…<\/a><\/p>\n","protected":false},"author":660,"featured_media":0,"parent":0,"menu_order":4,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_acf_changed":false,"footnotes":""},"class_list":["post-120","page","type-page","status-publish","hentry"],"acf":[],"featured_image_src":null,"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v27.7 - https:\/\/yoast.com\/product\/yoast-seo-wordpress\/ -->\n<title>Arothron - R package - Antonio Profico<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/people.unipi.it\/antonio_profico\/arothron-r-package\/\" \/>\n<meta property=\"og:locale\" content=\"it_IT\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"Arothron - R package - Antonio Profico\" \/>\n<meta property=\"og:description\" content=\"Install Arothron The Arothron R package is designed to analyse digital models of fossil specimens. 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